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PhD positions in quantitative imaging of ciliary transport

Czech Republic, Vestec, Prague-west · Job Posted February 01, 2026
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Job Description

The Institute of Biotechnology (IBT) invites applications for multiple PhD positions in the newly established Laboratory of Intracellular Dynamics led by Aniruddha Mitra, PhD. Our lab explores how molecular motors and cytoskeletal systems organize cells into functional compartments. Using C. elegans sensory neurons, we combine genetics, advanced fluorescence microscopy, and single-molecule biophysics to uncover how proteins are selectively transported into cilia—tiny cellular antennae essential for sensing and signaling.

Job Responsibility

  • Track A — Single-Molecule Dissection of Ciliary Entry: Use single-molecule imaging in living neurons to track proteins from dendritic transport to ciliary entry and quantify their interactions with the IFT machinery
  • Work with state-of-the-art microscopy, genetically encoded reporters, and quantitative image analysis to study molecular dynamics in vivo
  • Track B — Developing Next-Generation Imaging with Synthetic Dyes: Build new imaging technology
  • Develop methods that combine ensemble (bulk) and single-molecule measurements in the same living cell, using self-labelling tags (HaloTag/SNAP-tag) and bright synthetic fluorophores
  • Establish strategies to track individual molecules over long times with superior brightness and photostability
  • Image the same protein population simultaneously at single-molecule and ensemble levels
  • Visualize transport, entry, exit, and recycling of proteins in sensory cilia in real time

Requirements

  • Master’s degree in molecular/cellular biology, biophysics, physics, bioengineering, chemistry, or a related field
  • Interest in microscopy and quantitative approaches
  • Prior experience with C. elegans, imaging, optics, or coding is welcome but not required

Nice to have

Prior experience with C. elegans, imaging, optics, or coding

What we offer

  • Fully funded PhD positions (or co-funded according to admission outcome)
  • Training in advanced live-cell and single-molecule microscopy
  • An international, interdisciplinary environment at the BIOCEV research center
  • Access to state-of-the-art imaging facilities (TIRF, spinning-disk, lattice light-sheet)
  • Supportive mentoring in a newly built, creative research group where you can shape your project

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